MersV1, France, Analysis, bibRecord, 000145

Spatio‐temporal analysis of cyprinid herpesvirus 3 genetic diversity at a local scale

Identifieur interne : 000145 ( France/Analysis ); précédent : 000144; suivant : 000146

Spatio‐temporal analysis of cyprinid herpesvirus 3 genetic diversity at a local scale

Auteurs : J-C Avarre [France] ; A. Santika [Indonésie] ; A. Bentenni [France] ; Z. Zainun [Indonésie] ; J-P Madeira [France] ; M. Maskur [Indonésie] ; L. Bigarré [France] ; D. Caruso [France]

Source :

Journal of Fish Diseases [ 0140-7775 ] ; 2012-10.

RBID : ISTEX:9C5137429E0B664DFE996922DA88369F145D5C92

Abstract

Cyprinid herpesvirus 3 (CyHV‐3), the causative agent of koi herpesvirus disease, is a major threat for carp populations in many countries worldwide, including Indonesia. It has been shown that many genotypes circulate worldwide, all highly related to one of the two known lineages U/I and J. In this study, we evaluated the spatial and temporal distribution of CyHV‐3 strains in a small enzootic area, the lake of Cirata (West Java, Indonesia). Of the 365 samples analysed, from clinical or asymptomatic fish, 244 were found positive for CyHV‐3, suggesting a high occurrence of the virus. Genotyping of these viral specimens with a range of molecular markers revealed the presence of numerous haplotypes in the host population, all related to the J lineage. In single individuals, mixed‐genotype infections occurred at high frequency. The present results demonstrate that polymorphic molecular markers are suitable to monitor the genetic evolution of a viral population in an enzootic area.

Url:

https://api.istex.fr/ark:/67375/WNG-GC2S19VN-1/fulltext.pdf

DOI: 10.1111/j.1365-2761.2012.01404.x

Affiliations:

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ISTEX:9C5137429E0B664DFE996922DA88369F145D5C92

Le document en format XML

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<front><div type="abstract">Cyprinid herpesvirus 3 (CyHV‐3), the causative agent of koi herpesvirus disease, is a major threat for carp populations in many countries worldwide, including Indonesia. It has been shown that many genotypes circulate worldwide, all highly related to one of the two known lineages U/I and J. In this study, we evaluated the spatial and temporal distribution of CyHV‐3 strains in a small enzootic area, the lake of Cirata (West Java, Indonesia). Of the 365 samples analysed, from clinical or asymptomatic fish, 244 were found positive for CyHV‐3, suggesting a high occurrence of the virus. Genotyping of these viral specimens with a range of molecular markers revealed the presence of numerous haplotypes in the host population, all related to the J lineage. In single individuals, mixed‐genotype infections occurred at high frequency. The present results demonstrate that polymorphic molecular markers are suitable to monitor the genetic evolution of a viral population in an enzootic area.</div>
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Spatio‐temporal analysis of cyprinid herpesvirus 3 genetic diversity at a local scale

Spatio‐temporal analysis of cyprinid herpesvirus 3 genetic diversity at a local scale

Source :

Abstract

Links toward previous steps (curation, corpus...)

Links to Exploration step

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

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